The formula this page uses
∬_R f(x, y) dA = ∫ₐᵇ ∫_{g₁(x)}^{g₂(x)} f(x, y) dy dx
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∬_R f(x, y) dA = ∫ₐᵇ ∫_{g₁(x)}^{g₂(x)} f(x, y) dy dx
A rectangular region
Not for a continuous function over a sensible region: Fubini's theorem guarantees both orders give 64 for the rectangle above. What changes is the difficulty, and sometimes one order has no elementary antiderivative at all while the other is easy.
If f is a height, it is the volume under the surface and above the region. If f is a density in kg per m², it is the total mass. If f is just 1, the two integrals collapse into the plain area of R.
Look at the region. If horizontal slices have simple endpoints, integrate in x first. If vertical slices are simpler, integrate in y first. For the triangle above, vertical slices run from y = 0 up to y = x, so dy goes inside.
Yes, whenever f dips below zero over part of the region. It measures signed volume the same way a single definite integral measures signed area, so subtract-and-cancel behaviour is expected, not an error.